Knowledge-Based Named Entity Recognition of Archaeological Concepts in Dutch

The advancement of Natural Language Processing (NLP) allows the process of deriving information from large volumes of text to be automated, making text-based resources more discoverable and useful. The attention is turned to one of the most important, but traditionally difficult to access resources in archaeology; the largely unpublished reports generated by commercial or “rescue” archaeology, commonly known as “grey literature”. The paper presents the development and evaluation of a Named Entity Recognition system of Dutch archaeological grey literature targeted at extracting mentions of artefacts, archaeological features, materials, places and time entities. The role of domain vocabulary is discussed for the development of a KOS-driven NLP pipeline which is evaluated against a Gold Standard, human-annotated corpus

Information Extraction Techniques for the Purposes of Semantic Indexing of Archaeological Resources

The paper describes the use of Information Extraction (IE), a Natural Language Processing (NLP) technique to assist ‘rich’ semantic indexing of diverse archaeological text resources. Such unpublished online documents are often referred to as ‘Grey Literature’. Established document indexing techniques are not sufficient to satisfy user information needs that expand beyond the limits of a simple term matching search. The focus of the research is to direct a semantic-aware 'rich' indexing of diverse natural language resources with properties capable of satisfying information retrieval from on-line publications and datasets associated with the Semantic Technologies for Archaeological Resources (STAR) project in the UoG Hypermedia Research Unit. The study proposes the use of knowledge resources and conceptual models to assist an Information Extraction process able to provide ‘rich’ semantic indexing of archaeological documents capable of resolving linguistic ambiguities of indexed terms. CRM CIDOC-EH, a standard core ontology in cultural heritage, and the English Heritage (EH) Thesauri for archaeological concepts are employed to drive the Information Extraction process and to support the aims of a semantic framework in which indexed terms are capable of supporting semantic-aware access to on-line resources. The paper describes the process of semantic indexing of archaeological concepts (periods and finds) in a corpus of 535 grey literature documents using a rule based Information Extraction technique facilitated by the General Architecture of Text Engineering (GATE) toolkit and expressed by Java Annotation Pattern Engine (JAPE) rules. Illustrative examples demonstrate the different stages of the process. Initial results suggest that the combination of information extraction with knowledge resources and standard core conceptual models is capable of supporting semantic aware and linguistically disambiguate term indexing

Natural Language Processing for Under-resourced Languages: Developing a Welsh Natural Language Toolkit

Language technology is becoming increasingly important across a variety of application domains which have become common place in large, well-resourced languages. However, there is a danger that small, under-resourced languages are being increasingly pushed to the technological margins. Under-resourced languages face significant challenges in delivering the underlying language resources necessary to support such applications. This paper describes the development of a natural language processing toolkit for an under-resourced language, Cymraeg (Welsh). Rather than creating the Welsh Natural Language Toolkit (WNLT) from scratch, the approach involved adapting and enhancing the language processing functionality provided for other languages within an existing framework and making use of external language resources where available. This paper begins by introducing the GATE NLP framework, which was used as the development platform for the WNLT. It then describes each of the core modules of the WNLT in turn, detailing the extensions and adaptations required for Welsh language processing. An evaluation of the WNLT is then reported. Following this, two demonstration applications are presented. The first is a simple text mining application that analyses wedding announcements. The second describes the development of a Twitter NLP application, which extends the core WNLT pipeline. As a relatively small-scale project, the WNLT makes use of existing external language resources where possible, rather than creating new resources. This approach of adaptation and reuse can provide a practical and achievable route to developing language resources for under-resourced languages

Migration on request, a practical technique for preservation

Maintaining a digital object in a usable state over time is a crucial aspect of digital preservation. Existing methods of preserving have many drawbacks. This paper describes advanced techniques of data migration which can be used to support preservation more accurately and cost effectively. To ensure that preserved works can be rendered on current computer systems over time, “traditional migration” has been used to convert data into current formats. As the new format becomes obsolete another conversion is performed, etcetera. Traditional migration has many inherent problems as errors during transformation propagate throughout future transformations. CAMiLEON’s software longevity principles can be applied to a migration strategy, offering improvements over traditional migration. This new approach is named “Migration on Request.” Migration on Request shifts the burden of preservation onto a single tool, which is maintained over time. Always returning to the original format enables potential errors to be significantly reduced

Geographical information retrieval with ontologies of place

Geographical context is required of many information retrieval tasks in which the target of the search may be documents, images or records which are referenced to geographical space only by means of place names. Often there may be an imprecise match between the query name and the names associated with candidate sources of information. There is a need therefore for geographical information retrieval facilities that can rank the relevance of candidate information with respect to geographical closeness of place as well as semantic closeness with respect to the information of interest. Here we present an ontology of place that combines limited coordinate data with semantic and qualitative spatial relationships between places. This parsimonious model of geographical place supports maintenance of knowledge of place names that relate to extensive regions of the Earth at multiple levels of granularity. The ontology has been implemented with a semantic modelling system linking non-spatial conceptual hierarchies with the place ontology. An hierarchical spatial distance measure is combined with Euclidean distance between place centroids to create a hybrid spatial distance measure. This is integrated with thematic distance, based on classification semantics, to create an integrated semantic closeness measure that can be used for a relevance ranking of retrieved objects

D16.4: Final Report on Natural Language Processing

This document is a deliverable (D16.4) of the ARIADNE project (“Advanced Research Infrastructure for Archaeological Dataset Networking in Europe”), which is funded under the European Community's Seventh Framework Programme. It presents the final results of the work carried out in Tasks 16.2 “Natural Language Processing (NLP)”. The report presents one of the most important, but traditionally difficult to access resources in archaeology; the largely unpublished reports generated by commercial or “rescue” archaeology, commonly known as “grey literature”, exploring both rule-based and machine learning NLP methods, the use of archaeological thesauri in NLP, and various Information Extraction (IE) methods in their own language

ARIADNE: A Research Infrastructure for Archaeology

Research e-infrastructures, digital archives, and data services have become important pillars of scientific enterprise that in recent decades have become ever more collaborative, distributed, and data intensive. The archaeological research community has been an early adopter of digital tools for data acquisition, organization, analysis, and presentation of research results of individual projects. However, the provision of e-infrastructure and services for data sharing, discovery, access, and (re)use have lagged behind. This situation is being addressed by ARIADNE, the Advanced Research Infrastructure for Archaeological Dataset Networking in Europe. This EU-funded network has developed an e-infrastructure that enables data providers to register and provide access to their resources (datasets, collections) through the ARIADNE data portal, facilitating discovery, access, and other services across the integrated resources. This article describes the current landscape of data repositories and services for archaeologists in Europe, and the issues that make interoperability between them difficult to realize. The results of the ARIADNE surveys on users’ expectations and requirements are also presented. The main section of the article describes the architecture of the e-infrastructure, core services (data registration, discovery, and access), and various other extant or experimental services. The ongoing evaluation of the data integration and services is also discussed. Finally, the article summarizes lessons learned and outlines the prospects for the wider engagement of the archaeological research community in the sharing of data through ARIADNE

Structure based inhibitor design targeting glycogen phosphorylase b. Virtual screening, synthesis, biochemical and biological assessment of novel N-acyl-β-d-glucopyranosylamines

Glycogen phosphorylase (GP) is a validated target for the development of new type 2 diabetes treatments. Exploiting the Zinc docking database, we report the in silico screening of 1888 β- D-glucopyranose-NH-CO-R putative GP inhibitors differing only in their R groups. CombiGlide and GOLD docking programs with different scoring functions were employed with the best performing methods combined in a “consensus scoring” approach to ranking of ligand binding affinities for the active site. Six selected candidates from the screening were then synthesized and their inhibitory potency was assessed both in vitro and ex vivo. Their inhibition constants’ values, in vitro, ranged from 5 to 377 µM while two of them were effective at causing inactivation of GP in rat hepatocytes at low µM concentrations. The crystal structures of GP in complex with the inhibitors were defined and provided the structural basis for their inhibitory potency and data for further structure based design of more potent inhibitors